Is is possible to create a sword and then use it in the regular non-modded game?
I want to make a sword with a specific name but if I create it in the modding tools, it just reverts back to the original sword I used as a template when the mod is removed.
ibugsy is right, your content shows up only in your mod, but you can still play the main map. Just building a mod with no files in it gives you the vanilla game with no changes. See the Asset Manager tutorial for details.